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USC-OGP 2-DE database

Two-dimensional polyacrylamide gel electrophoresis database
USC-OGP 2-DE database 
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Searching in 'USC-OGP 2-DE database' for entry matching: Q07955




USC-OGP 2-DE database:  Q07955

Q07955


General information about the entry
View entry in simple text format
Entry nameSRSF1_HUMAN
Primary accession numberQ07955
integrated into USC-OGP 2-DE database on January 17, 2017 (release 1)
2D Annotations were last modified onJanuary 17, 2017 (version 1)
General Annotations were last modified on April 5, 2017 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Serine/arginine-rich splicing factor 1; AltName: Full=Alternative-splicing factor 1; Short=ASF-1; AltName: Full=Splicing factor, arginine/serine-rich 1; AltName: Full=pre-mRNA-splicing factor SF2, P33 subunit;.
Gene nameName=SRSF1
Synonyms=ASF, SF2, SF2P33, SFRS1
ORFNames=OK/SW-cl.3
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   2D GEL CHARACTERIZATION
Author 1., Author 2.
Submitted (Mar-2011) to Current
2D PAGE maps for identified proteins
How to interpret a protein

UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10}
Homo sapiens (Human)
UVEAL_MELANOMA_3-10
  map experimental info 		 
UVEAL_MELANOMA_3-10

MAP LOCATIONS:
pI=5.93; Mw=34664
pI=5.28; Mw=34566

Cross-references
UniProtKB/Swiss-ProtQ07955; SRSF1_HUMAN.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 0.0
Entry nameSRSF1_HUMAN
Primary accession numberQ07955
Secondary accession number(s) B2R6Z7 D3DTZ3 Q13809
Sequence was last modified on January 23, 2007 (version 2)
Annotations were last modified on March 15, 2017 (version 207)
Name and origin of the protein
DescriptionRecName: Full=Serine/arginine-rich splicing factor 1; AltName: Full=Alternative-splicing factor 1; Short=ASF-1; AltName: Full=Splicing factor, arginine/serine-rich 1; AltName: Full=pre-mRNA-splicing factor SF2, P33 subunit;
Gene nameName=SRSF1
Synonyms=ASF, SF2, SF2P33, SFRS1
ORFNames=OK/SW-cl.3
Encoded onName=SRSF1; Synonyms=ASF, SF2, SF2P33, SFRS1; ORFNames=OK/SW-cl.3
Keywords3D-structure; Acetylation; Alternative splicing; Complete proteome; Cytoplasm; Direct protein sequencing; Isopeptide bond; Methylation; mRNA processing; mRNA splicing; mRNA transport; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; Repeat; RNA-binding; Spliceosome; Transport; Ubl conjugation.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLM72709; AAA35565.1; -; mRNA
EMBLM72709; AAA35564.1; -; mRNA
EMBLM69040; AAA03476.1; -; mRNA
EMBLAB062124; BAB93456.1; -; mRNA
EMBLAK312781; BAG35644.1; -; mRNA
EMBLCH471109; EAW94485.1; -; Genomic_DNA
EMBLCH471109; EAW94486.1; -; Genomic_DNA
EMBLBC010264; AAH10264.1; -; mRNA
EMBLBC033785; AAH33785.1; -; mRNA
CCDSCCDS11600.1; -. [Q07955-1]; .
CCDSCCDS58580.1; -. [Q07955-3]; .
PIRA40040; A40040; .
PIRB40040; B40040; .
PIRC40040; C40040; .
RefSeqNP_001071634.1; NM_001078166.1. [Q07955-3]; .
RefSeqNP_008855.1; NM_006924.4. [Q07955-1]; .
UniGeneHs.68714; -; .
UniGeneHs.710026; -; .
UniGeneHs.744140; -; .
PDB1X4A; NMR; -; A=1-96
PDB2M7S; NMR; -; A=106-195
PDB2M8D; NMR; -; B=107-196
PDB2O3D; NMR; -; A=107-215
PDB3BEG; X-ray; 2.90 A; B=105-219
PDB4C0O; X-ray; 2.56 A; C/D=106-230
PDBsum1X4A; -; .
PDBsum2M7S; -; .
PDBsum2M8D; -; .
PDBsum2O3D; -; .
PDBsum3BEG; -; .
PDBsum4C0O; -; .
ProteinModelPortalQ07955; -; .
SMRQ07955; -; .
BioGrid112324; 173; .
DIPDIP-2155N; -; .
IntActQ07955; 59; .
MINTMINT-5000565; -; .
STRING9606.ENSP00000258962; -; .
iPTMnetQ07955; -; .
PhosphoSitePlusQ07955; -; .
SwissPalmQ07955; -; .
BioMutaSRSF1; -; .
DMDM730773; -; .
EPDQ07955; -; .
MaxQBQ07955; -; .
PaxDbQ07955; -; .
PeptideAtlasQ07955; -; .
PRIDEQ07955; -; .
TopDownProteomicsQ07955-1; -. [Q07955-1]; .
TopDownProteomicsQ07955-2; -. [Q07955-2]; .
TopDownProteomicsQ07955-3; -. [Q07955-3]; .
DNASU6426; -; .
EnsemblENST00000258962; ENSP00000258962; ENSG00000136450. [Q07955-1]; .
EnsemblENST00000581979; ENSP00000463223; ENSG00000136450. [Q07955-3]; .
EnsemblENST00000582730; ENSP00000462215; ENSG00000136450. [Q07955-3]; .
GeneID6426; -; .
KEGGhsa:6426; -; .
UCSCuc002ivi.4; human. [Q07955-1]; .
CTD6426; -; .
DisGeNET6426; -; .
GeneCardsSRSF1; -; .
H-InvDBHIX0173551; -; .
HGNCHGNC:10780; SRSF1; .
HPACAB013073; -; .
HPAHPA061301; -; .
MIM600812; gene; .
neXtProtNX_Q07955; -; .
OpenTargetsENSG00000136450; -; .
PharmGKBPA35696; -; .
eggNOGKOG0105; Eukaryota; .
eggNOGCOG0724; LUCA; .
GeneTreeENSGT00700000104103; -; .
HOVERGENHBG002295; -; .
InParanoidQ07955; -; .
KOK12890; -; .
PhylomeDBQ07955; -; .
TreeFamTF106261; -; .
ReactomeR-HSA-109688; Cleavage of Growing Transcript in the Termination Region; .
ReactomeR-HSA-159236; Transport of Mature mRNA derived from an Intron-Containing Transcript; .
ReactomeR-HSA-72163; mRNA Splicing - Major Pathway; .
ReactomeR-HSA-72165; mRNA Splicing - Minor Pathway; .
ReactomeR-HSA-72187; mRNA 3'-end processing; .
SIGNORQ07955; -; .
ChiTaRSSRSF1; human; .
EvolutionaryTraceQ07955; -; .
GeneWikiASF/SF2; -; .
GenomeRNAi6426; -; .
PMAP-CutDBQ07955; -; .
PROPR:Q07955; -; .
ProteomesUP000005640; Chromosome 17; .
BgeeENSG00000136450; -; .
CleanExHS_SFRS1; -; .
ExpressionAtlasQ07955; baseline and differential; .
GenevisibleQ07955; HS; .
GOGO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0070062; C:extracellular exosome; IDA:UniProtKB; .
GOGO:0016607; C:nuclear speck; IDA:MGI; .
GOGO:0005654; C:nucleoplasm; IDA:UniProtKB; .
GOGO:0005634; C:nucleus; IDA:UniProtKB; .
GOGO:0003729; F:mRNA binding; IDA:MGI; .
GOGO:0000166; F:nucleotide binding; IEA:InterPro; .
GOGO:0003723; F:RNA binding; IDA:UniProtKB; .
GOGO:0000380; P:alternative mRNA splicing; via spliceosome; IDA:GO_Central
GOGO:0060048; P:cardiac muscle contraction; IEA:Ensembl; .
GOGO:0001701; P:in utero embryonic development; IEA:Ensembl; .
GOGO:0097421; P:liver regeneration; IEA:Ensembl; .
GOGO:0031124; P:mRNA 3'-end processing; TAS:Reactome; .
GOGO:0000395; P:mRNA 5'-splice site recognition; IDA:UniProtKB; .
GOGO:0006406; P:mRNA export from nucleus; TAS:Reactome; .
GOGO:0006397; P:mRNA processing; TAS:ProtInc; .
GOGO:0006376; P:mRNA splice site selection; TAS:ProtInc; .
GOGO:0000398; P:mRNA splicing; via spliceosome; IC:UniProtKB
GOGO:0048709; P:oligodendrocyte differentiation; IEA:Ensembl; .
GOGO:0033120; P:positive regulation of RNA splicing; IEA:Ensembl; .
GOGO:0006405; P:RNA export from nucleus; TAS:Reactome; .
GOGO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome; .
Gene3D3.30.70.330; -; 2; .
InterProIPR012677; Nucleotide-bd_a/b_plait; .
InterProIPR000504; RRM_dom; .
PfamPF00076; RRM_1; 2; .
SMARTSM00360; RRM; 2; .
SUPFAMSSF54928; SSF54928; 1; .
PROSITEPS50102; RRM; 2; .


USC-OGP 2-DE database image

Gateways to other related servers

Database constructed and maintained by Angel Garcia, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server

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